I've just been reading The Jenny Code, and I'm looking for other SGA fic with a realistic take on the military side of the expedition. Gen or John/Rodney are both great.
I'll second the above recommendations for Miss Porcupine. Some other suggestions (none of these are strictly military, but all are more about the military/operational aspects of Atlantis). Please excuse my not providing links, every time I do my posts are flagged as spam.
Slybrarian.livejournal.com: Into the Whirlwind (This is an Atlantis Secedes story. Major pairing is Sheppard/Lorne) Sam-Storyteller.dreamwidth.org: My Home and Native Land. (Mostly about Chuck and Ronan, Gen.) Mhalachaiswords.livejournal.com: Agent Afloat (A crossover with NCIS. Ziva David on Atlantis, Gen with background Sheppard/McKay flirting). achiveofourown.org/users/ArwenLune: Rock Happy (A Generation Kill/SGA crossover. Concentrates on the Brad Colbert and a group of OC's A WIP but very, very good so far). Miss Porcupine's stories can be found here: archiveofourown.org/users/domarzione/pseuds/DomenikaMarzione
FYI: As I understand it, Miss Porcupine is still in the process of uploading her fic to AO3. Most everything she has is up on the DMZ. I highly recommend her writing, especially for her OCs.
For an intriguing AU but still "realistic" take on the Atlantis military, try esteefee's Almost Human. Gen, Robot!John.
I was going to recommend that one if someone else hadn't- Rock Happy is one of two WIPs which I'm actively reading (the other is Lit Gal's Airman Harris, which is SG1/BtVS and thus outside this search).
I'm really deeply involved in your storytelling; it's interesting in a way that I find little else to be, at my advanced age and state of fic ennui (I used to keep a huge rec list, including WIP updates in four fandoms, on a fandom BB and burnt most sincerely out).
Julia, cannot say enough good things about your story
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Date: 2012-07-11 02:38 am (UTC)Slybrarian.livejournal.com: Into the Whirlwind (This is an Atlantis Secedes story. Major pairing is Sheppard/Lorne)
Sam-Storyteller.dreamwidth.org: My Home and Native Land. (Mostly about Chuck and Ronan, Gen.)
Mhalachaiswords.livejournal.com: Agent Afloat (A crossover with NCIS. Ziva David on Atlantis, Gen with background Sheppard/McKay flirting).
achiveofourown.org/users/ArwenLune: Rock Happy (A Generation Kill/SGA crossover. Concentrates on the Brad Colbert and a group of OC's A WIP but very, very good so far).
Miss Porcupine's stories can be found here: archiveofourown.org/users/domarzione/pseuds/DomenikaMarzione
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Date: 2012-07-11 02:41 am (UTC)no subject
Date: 2012-07-11 03:08 am (UTC)For an intriguing AU but still "realistic" take on the Atlantis military, try
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Date: 2012-07-17 07:22 pm (UTC)Julia, cannot say enough good things about your story